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Somatic copy-number alteration identification software tools | DNA methylation microarray data analysis

The 450k platform is based on similar biochemical reaction principle and technology as the Infinium SNP arrays, making it possible to use the 450k platform to detect copy number variants (CNVs) as a zero-cost byproduct of methylation studies (Feber…
ChAMP
Desktop

ChAMP

Allows Illumina HumanMethylation BeadChip analysis. ChAMP is an integrated…

Allows Illumina HumanMethylation BeadChip analysis. ChAMP is an integrated analysis pipeline including functions for (i) filtering low quality probes, adjustment for Infinium I and Infinium II probe…

CopyNumber450kC…
Desktop

CopyNumber450kCancer

Provides a novel functionality to correct the center in segmentation data…

Provides a novel functionality to correct the center in segmentation data obtained from copy number calling tools such as CopyNumber450k and ChAMP. CopyNumber450kCancer implements the maximum density…

cnAnalysis450k
Desktop

cnAnalysis450k

Realizes the normalization, segmentation and aggregation of Illumina…

Realizes the normalization, segmentation and aggregation of Illumina methylation array copy number (CN) data (450k + EPIC). CnAnalysis450k allows to directly compare any preprocessed CN data. It…

CopyNumber450k
Desktop

CopyNumber450k

Allows copy number variant (CNV) calling from Illumina. CopyNumber450k is an R…

Allows copy number variant (CNV) calling from Illumina. CopyNumber450k is an R package for calling CNV from Illumina 450k methylation microarrays.

conumee
Desktop

conumee

Enhanced copy-number variation analysis using Illumina 450k methylation arrays.…

Enhanced copy-number variation analysis using Illumina 450k methylation arrays. conumee contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using…

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