SPRUCE specifications
Information
| Unique identifier | OMICS_14281 |
|---|---|
| Name | SPRUCE |
| Alternative name | Somatic Phylogeny Reconstruction Using Combinatorial Enumeration |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | Confidence intervals and copy number mixing proportions for each character per sample. |
| Input format | VAF |
| Output data | Multi-state perfect phylogeny trees. |
| Operating system | Unix/Linux |
| Programming languages | C++ |
| Computer skills | Advanced |
| Stability | Stable |
| Requirements | CMake, Boost, LEMON, Graphviz |
| Maintained | Yes |
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Maintainer
- person_outline Benjamin Raphael <>
SPRUCE article
library_books
Inferring the Mutational History of a Tumor Using Multi-state Perfect Phylogeny Mixtures.
2016 Cell Syst
PMID: 27467246
SPRUCE institution(s)
Department of Computer Science and Center for Computational Molecular Biology, Brown University, Providence, RI, USA; Department of Computer Science, Carleton College, Northfield, MN, USA
SPRUCE funding source(s)
This work was supported by National Science Foundation (NSF) grant IIS- 1016648 and NIH grants R01HG005690, R01HG007069 and R01CA180776.
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