SomaticSniper protocols

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description
SomaticSniper computational protocol

SomaticSniper specifications

Information


Unique identifier OMICS_00092
Name SomaticSniper
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C
License MIT License
Computer skills Advanced
Version 1.0.5.0
Stability Stable
Maintained Yes

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Publication for SomaticSniper

SomaticSniper IN pipeline

2016
PMCID: 4741064
PMID: 26855855
DOI: 10.7717/peerj.1508

[…] et al., 2010) to do indel realignment and base recalibration, according to the standard best practices for genomics data (gatk development team, 2015). finally, we predicted somatic variants with somaticsniper (larson et al., 2012), with the output given in vcf format. 10.7717/peerj.1508/fig-1figure 1, for all alignments, average read coverage was 30x, with a low of 5x and a high of 60x […]

SomaticSniper institution(s)
The Genome Institute, Washington University, St Louis, MO, USA; Department of Genetics, Washington University, St Louis, MO, USA; Department of Internal Medicine, Division of Oncology, Washington University, St Louis, MO, USA; Siteman Cancer Center, Washington University, St Louis, MO, USA
SomaticSniper funding source(s)
Supported by National Human Genome Research Institute [grant number HG003079].

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