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Protocols

SORA specifications

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Unique identifier OMICS_22042
Name SORA
Alternative name Semantic Overlap Ratio of Annotations
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

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Publication for Semantic Overlap Ratio of Annotations

SORA citation

call_split

Refine gene functional similarity network based on interaction networks

2017
BMC Bioinformatics
PMCID: 5751769
PMID: 29297381
DOI: 10.1186/s12859-017-1969-1
call_split See protocol

[…] c Annotations (IEA).Since one method may have error prone in measuring functional similarity, the similarity here is calculated by six different kinds of methods. They are Resnik [], Wang [], GIC [], SORA [], WIS [] and TopoICSim [] respectively. Method Resnik, Wang, and TopoICSim are pair-wise approaches, while method GIC, SORA and WIS are group-wise approaches. Besides, with the help of online t […]


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SORA institution(s)
Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin, China; Department of Information Management and Information System, Northeast Forestry University, Harbin, China; Department of Computer Science and Technology, Heilongjiang University, Harbin, China
SORA funding source(s)
Supported by the Natural Science Foundation of China (60932008, 61172098, 61271346); Specialized Research Fund for the Doctoral Program of Higher Education of China (20112302110040).

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