sORF finder statistics

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Associated diseases

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sORF finder specifications

Information


Unique identifier OMICS_18335
Name sORF finder
Alternative name Small Open Reading Frames
Interface Web user interface
Restrictions to use None
Input data Some nucleotide sequences.
Input format FASTA
Programming languages Perl
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Information


Unique identifier OMICS_18335
Name sORF finder
Alternative name Small Open Reading Frames
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some nucleotide sequences.
Input format FASTA
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability No
Maintained No

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Publication for Small Open Reading Frames

sORF finder in publications

 (2)
PMCID: 5928905
PMID: 29721095
DOI: 10.7150/thno.24677

[…] of ncrnas. the score was calculated by related software such as phylogenetic analysis of codon substitution frequencies based on sequence alignment (phylocsf), coding potential calculator (cpc), sorf finder, coding region identification tool invoking comparative analysis (critica), micro-peptide detection pipeline (micpdp) and so on , , . more importantly, a number of studies […]

PMCID: 3818988
PMID: 21518296
DOI: 10.1111/j.1751-7915.2011.00261.x

[…] tool for mining bacterial genomes for bacteriocins (). other tools aim at small porfs in general, by combining abā€initio methods as described earlier with estimates of selection pressure, e.g. sorf finder (). in addition to these bioinformatics approaches, there are also experimental techniques particularly suited or specifically designed for the identification and functional […]


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sORF finder institution(s)
Plant Science Center, RIKEN, Yokohama, Japan; Bioinformatics and Systems Engineering Division, RIKEN, Yokohama, Japan; Department of Plant Biology, Michigan State University, East Lansing, MI, USA
sORF finder funding source(s)
RIKEN Plant Science Center, a program for promotion of Basic Research Activities for Innovative Biosciences (PROBRAIN); National Science Foundation grant (MCB-0749634).

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