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SOrt-ITEMS | Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences

Allows taxonomic estimation of metagenomic sequences. SOrt-ITEMS is a similarity-based binning method that adopts an exhaustive approach to judge first the quality of the alignment of the read with its hit sequences and arrives at an appropriate level in the taxonomic tree at which the read can be assigned. The software has been tested with sequences which mimic reads, obtained from 454 and Sanger sequencing technologies.

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SOrt-ITEMS classification

SOrt-ITEMS specifications

Unique identifier:
OMICS_01465
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Perl
Stability:
Stable
Name:
Sequence Orthology approach for Identification and Taxonomic Estimation of Metagenomic Sequences
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

SOrt-ITEMS distribution

versioning

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No versioning.

SOrt-ITEMS support

Maintainer

This tool is not available anymore.

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Publications

Institution(s)

Bio-Sciences Division, Innovation Laboratory, Tata Consultancy Services Limited, Madhapur, Hyderabad, India

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