Protocols

SoRT2 specifications

Information


Unique identifier OMICS_23293
Name SoRT2
Software type Application/Script
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Maintainer


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Publication for SoRT2

SoRT2 citations

 (2)
call_split

Multiple Lines of Evidence from Mitochondrial Genomes Resolve Phylogenetic Relationships of Parasitic Wasps in Braconidae

2016
Genome Biol Evol
PMCID: 5630901
PMID: 27503293
DOI: 10.1093/gbe/evw184
call_split See protocol

[…] od with arithmetic mean (UPGMA) and Fitch–Margoliash (FM) methods in the web server ‘Sorting genomes and reconstructing phylogenetic trees by Reversals, generalized Transpositions and Translocations (SoRT2)’ (). Pairwise distances from genome order data was calculated based on the double cut and join (DCJ) rearrangement model, that is, genes are cut in two places with a subsequent re-joining in a […]

library_books

Transcriptomic analysis of hepatic responses to testosterone deficiency in miniature pigs fed a high cholesterol diet

2015
BMC Genomics
PMCID: 4328429
PMID: 25887406
DOI: 10.1186/s12864-015-1283-0

[…] riched genes mediating cholesterol, bile acid, and glucose metabolism are also displayed in Figure . Genes involved in cholesterol biosynthesis (PMVK and TM7SF2), cholesterol esterification (LCAT and SORT2), cholesterol transport and absorption (LDLR and LIPC), and bile acid metabolic processes (NR1H4 and HSD3B7) were downregulated in the livers of CM pigs, but restored by testosterone treatment ( […]

SoRT2 institution(s)
Department of Computer Science, National Tsing Hua University, Hsinchu, Taiwan, China; Institute of Bioinformatics and Systems Biology, Hsinchu, Taiwan, China; Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, China
SoRT2 funding source(s)
Supported by National Science Council of Republic of China (NSC97-2221-E-009-081-MY3); NSC97-2221- E-007-080-MY3, NSC97-2221-E-007-081-MY3, NSC98- 2627-B-007-011).

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