SOSUI-GramN statistics

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SOSUI-GramN specifications

Information


Unique identifier OMICS_03895
Name SOSUI-GramN
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for SOSUI-GramN

SOSUI-GramN in publications

 (10)
PMCID: 5348505
PMID: 28352257
DOI: 10.3389/fmicb.2017.00396

[…] a novel rv approach employing a negative selection strategy was used in this work (figure ). at first, the three currently used bioinformatic tools, psortb3.0 (yu et al., ), cello (yu et al., ), and sosui-gramn (imai et al., ), were used to predict subcellular localization of these proteins by a majority voting strategy. proteins predicted as cyts by at least two of the three bioinformatic tools […]

PMCID: 5351547
PMID: 28344832
DOI: 10.4155/fsoa-2016-0066

[…] average number of polar and nonpolar amino acids were determined by using emboos pepstat []. to discover the position of these proteins with predicted signature sequences, tmhmm [], hmmtop [] and sosui-gramn [] were used, while subcellular localization of proteins was determined by cello [,]. the signalp 4.1 [] was used to determine peptide signal cleavage sites., once signature sequence […]

PMCID: 5363822
PMID: 28045455
DOI: 10.1038/ismej.2016.169

[…] the pymol molecular graphics system (version 1.8 schrondinger, llc, cambridge, uk) was used to build structural alignments. the phylogenetic tree was constructed using mega6 (). psortb software and sosui gramn server were used to predict sub-cellular location of proteins (; ), tmhmm software to predict transmembrane domains (), and signalp and sosuisignal to predict signal peptides (; ). […]

PMCID: 3907486
PMID: 24498044
DOI: 10.1371/journal.pone.0087206

[…] (http://www.cbs.dtu.dk/services/signalp-4.0 and http://www.cbs.dtu.dk/services/lipop-1.0. accessed 30 march 2013)., the subcellular localization of each protein was predicted using psortb 3.0.2 or sosui-gramn, which is available online (http://www.psort.org/psortb/index.htmland http://bp.nuap.nagoya-u.ac.jp/sosui/sosuigramn/sosuigramn_submit.html. accessed 22 january 2013)., spi, signal […]

PMCID: 3729834
PMID: 23936223
DOI: 10.1371/journal.pone.0070509

[…] a best match for the assigned protein. protein hits against species other than a. actinomycetemcomitans or humans were filtered out. protein hits of less than two peptides were also removed., the sosui-gramn server [] was employed to predict the sub-cellular location of the protein. the sequence was analyzed using the signalp 4.1 server [] to predict the length of the signal sequence […]


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SOSUI-GramN institution(s)
Department of Applied Physics, Graduate School of Engineering, Nagoya University, Furocho, Chikusa-ku, Nagoya, Japan

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