SOSUI-GramN statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool SOSUI-GramN
info

Tool usage distribution map

This map represents all the scientific publications referring to SOSUI-GramN per scientific context
info info

Associated diseases

This word cloud represents SOSUI-GramN usage per disease context
info

Popular tool citations

chevron_left Secretome analysis chevron_right
Want to access the full stats & trends on this tool?

Protocols

SOSUI-GramN specifications

Information


Unique identifier OMICS_03895
Name SOSUI-GramN
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for SOSUI-GramN

SOSUI-GramN citations

 (12)
library_books

Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome

2017
Front Microbiol
PMCID: 5491611
PMID: 28713344
DOI: 10.3389/fmicb.2017.01215

[…] iplasmic, secreted, and OM: PSORTb 3.0.2 (Yu et al., ) using default input parameters for Gram-negative bacteria, CELLO 2.5 (Yu et al., ) with default input parameters for Gram-negative bacteria, and SOSUI-GramN (Imai et al., ) with default parameters. These analyses were complemented with prediction of transmembrane helices by TMHMM 2.0 (Krogh et al., ). β-Barrels were predicted using BOMP (Berve […]

library_books

A Novel Pan Genome Reverse Vaccinology Approach Employing a Negative Selection Strategy for Screening Surface Exposed Antigens against leptospirosis

2017
Front Microbiol
PMCID: 5348505
PMID: 28352257
DOI: 10.3389/fmicb.2017.00396

[…] A novel RV approach employing a negative selection strategy was used in this work (Figure ). At first, the three currently used bioinformatic tools, PSORTb3.0 (Yu et al., ), CELLO (Yu et al., ), and SOSUI-GramN (Imai et al., ), were used to predict subcellular localization of these proteins by a majority voting strategy. Proteins predicted as CYTs by at least two of the three bioinformatic tools […]

library_books

In silico functional elucidation of uncharacterized proteins of Chlamydia abortus strain LLG

2017
PMCID: 5351547
PMID: 28344832
DOI: 10.4155/fsoa-2016-0066

[…] ith average number of polar and nonpolar amino acids were determined by using EMBOOS PepStat []. To discover the position of these proteins with predicted signature sequences, TMHMM [], HMMTOP [] and SOSUI-GramN [] were used, while subcellular localization of proteins was determined by CELLO [,]. The SignalP 4.1 [] was used to determine peptide signal cleavage sites. […]

library_books

The Pseudomonas putida T6SS is a plant warden against phytopathogens

2017
PMCID: 5363822
PMID: 28045455
DOI: 10.1038/ismej.2016.169

[…] . The PyMOL Molecular Graphics System (Version 1.8 Schrondinger, LLC, Cambridge, UK) was used to build structural alignments. The phylogenetic tree was constructed using MEGA6 (). PSORTb software and SOSUI GramN server were used to predict sub-cellular location of proteins (; ), TMHMM software to predict transmembrane domains (), and SignalP and SOSUIsignal to predict signal peptides (; ). Synteny […]

library_books

Genome Report: Identification and Validation of Antigenic Proteins from Pajaroellobacter abortibovis Using De Novo Genome Sequence Assembly and Reverse Vaccinology

2016
PMCID: 5295582
PMID: 28040777
DOI: 10.1534/g3.116.036673

[…] membrane, periplasm, outer membrane, or are extracellular (i.e., secreted). The predictions were determined using PSORTb2.0 in Vaxign and three additional stand-alone software programs: PSORTb3.0 (), SOSUI-GramN (), and CELLO (). No difference was observed between PSORTb2.0 and PSORTb3.0, so results from PSORTb2.0 were excluded from further analysis. A score of 1 was assigned for prediction of out […]

call_split

Identification of a Novel Bacterial Outer Membrane Interleukin 1Β Binding Protein from Aggregatibacter actinomycetemcomitans

2013
PLoS One
PMCID: 3729834
PMID: 23936223
DOI: 10.1371/journal.pone.0070509
call_split See protocol

[…] The SOSUI-GramN server [] was employed to predict the sub-cellular location of the protein. The sequence was analyzed using the SignalP 4.1 Server [] to predict the length of the signal sequence and the L […]


Want to access the full list of citations?
SOSUI-GramN institution(s)
Department of Applied Physics, Graduate School of Engineering, Nagoya University, Furocho, Chikusa-ku, Nagoya, Japan

SOSUI-GramN reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SOSUI-GramN