SOSUI specifications

Information


Unique identifier OMICS_07263
Interface Web user interface
Restrictions to use None
Input data A protein sequence
Output data Membrane proteins
Computer skills Basic
Stability Stable
Maintained Yes

SOSUI articles

SOSUI citations

 (4)
2015
PMCID: 4351530

[…] into dh5α cells for sequencing. protein sequences were deduced from the sequenced orfs and analyzed using signalp (www.cbs.dtu.dk/services/signalp) and sosui (http://bp.nuap.nagoya-u.ac.jp/sosui) servers that identify the signal peptide and predict membrane protein, respectively., homologous proteins from other species were identified using blastp software at ncbi […]

2013
PMCID: 3557282

[…] in regulating initial phagosome trafficking towards fusion to the lysosome, a pivotal early decision taken by the pathogen after macrophage uptake [54]. similar to the l. pneumophila protein, the sosui analysis of the putative p. salmonis dota reveals the presence of at least five hydrophobic domains with 23 residues each one, related with transmembrane regions (table 4), indicating […]

2013
PMCID: 3557282

[…] processed using jalview software [41]. due to the l. pneumophila dota has been reported as a transmembrane protein, an additional analysis using the sosui software (http://bp.nuap.nagoya-u.ac.jp/sosui/) was made for the putative p. salmonis dota protein in order to determine transmembrane and hydrophobic domains., once the identities of the new p. salmonis sequences were obtained, specific […]

2010
PMCID: 2885270

[…] to curated databases). the kegg pathway and metacyc24 databases were used for pathway reconstruction. signal peptides were predicted with signalp,25 whereas transmembrane helices were predicted with sosui.26 clusters of regularly interspaced repeats [clustered regularly interspaced short palindromic repeats (crispr)] were identified using the crisprfinder.27, protein sequence data for bacterial […]

SOSUI institution(s)
Tokyo University of Agriculture and Technology, Faculty of Technology, Department of Biotechnology, Tokyo, Japan; Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan
SOSUI funding source(s)
This study was partly supported by a grant-in-aid for special projects in genome science from the Ministry of Education, Sports, Science and Technology.

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