sourmash statistics

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Citations per year

Number of citations per year for the bioinformatics software tool sourmash
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Tool usage distribution map

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sourmash specifications

Information


Unique identifier OMICS_21832
Name sourmash
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Python, Scala
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Versioning


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Maintainers


  • person_outline Titus Brown
  • person_outline Luiz Irber

Publication for sourmash

sourmash citation

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Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen

2018
Nat Commun
PMCID: 5830445
PMID: 29491419
DOI: 10.1038/s41467-018-03317-6

[…] MAG annotation pipeline is available as a reproducible workflow. Genomes and gene predictions were loaded into a Meta4 databaseThe cleaned bins were compared, using MinHash sketches as implemented in Sourmash, to 100,000 genomes in GenBank; 410 genomes from the Hungate 1000 project; and 1003 genomes from the GEBA project. The results can be seen in Supplementary Data . The best hits from these ana […]


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sourmash institution(s)
University of California, Davis, CA, USA

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