sourmash statistics

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Citations per year

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Popular tool citations

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Associated diseases

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sourmash specifications

Information


Unique identifier OMICS_21832
Name sourmash
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Python, Scala
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Titus Brown <>
  • person_outline Luiz Irber <>

Publication for sourmash

sourmash in publication

PMCID: 5830445
PMID: 29491419
DOI: 10.1038/s41467-018-03317-6

[…] annotation pipeline is available as a reproducible workflow. genomes and gene predictions were loaded into a meta4 database, the cleaned bins were compared, using minhash sketches as implemented in sourmash, to 100,000 genomes in genbank; 410 genomes from the hungate 1000 project; and 1003 genomes from the geba project. the results can be seen in supplementary data . the best hits […]


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sourmash institution(s)
University of California, Davis, CA, USA

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