SoyGD statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

SoyGD specifications

Information


Unique identifier OMICS_03296
Name SoyGD
Alternative name Soybean Genome Database
Restrictions to use None
Database management system MySQL
Maintained No

Taxon


  • Plants and Fungi
    • Glycine max

Publication for Soybean Genome Database

SoyGD citations

 (25)
library_books

Genome wide dissection and expression profiling of unique glyoxalase III genes in soybean reveal the differential pattern of transcriptional regulation

2018
Sci Rep
PMCID: 5859077
PMID: 29555947
DOI: 10.1038/s41598-018-23124-9

[…] soybean genome were identified by using previously characterized Arabidopsis DJ-1 member with maximum GLY III activity, AtDJ-1D protein sequence (AT3G02720/ Q9M8R4) as a query in the BLASTP search of soybean genome database (Wm82.a2.v1) (http://www.soybase.org/) with an e-value of 1.0 and identified eleven members. Each of these newly identified members was subsequently used as a secondary query, […]

call_split

Soybean LEC2 Regulates Subsets of Genes Involved in Controlling the Biosynthesis and Catabolism of Seed Storage Substances and Seed Development

2017
Front Plant Sci
PMCID: 5611487
PMID: 28979275
DOI: 10.3389/fpls.2017.01604
call_split See protocol

[…] The Arabidopsis LEAFY COTYLEDON 2 (LEC2) was used as a query to search Glycine max LEC2 gene by BLASTN analysis. Briefly, the obtained nucleotide sequences were queried against the soybean genome database in search of homologous sequences. Two homologs of AtLEC2 were found in soybean Glyma.20G035800.1 (GmLEC2a) and Glyma.20G035700.1 (GmLEC2b). Moreover, the predicted amino acid […]

call_split

A novel role of the soybean clock gene LUX ARRHYTHMO in male reproductive development

2017
Sci Rep
PMCID: 5587693
PMID: 28878247
DOI: 10.1038/s41598-017-10823-y
call_split See protocol

[…] Protein sequences of different plant species were retrieved from NCBI (https://www.ncbi.nlm.nih.gov/) and soybean genome database at Phytozome (https://www.phytozome.net/). Sequences were aligned in the multiple sequences alignment tool CLUSTALX2.0, using Gonnet Protein Weight Matrix with default paramete […]

library_books

Analysis of EF Hand Proteins in Soybean Genome Suggests Their Potential Roles in Environmental and Nutritional Stress Signaling

2017
Front Plant Sci
PMCID: 5443154
PMID: 28596783
DOI: 10.3389/fpls.2017.00877

[…] ein kinaseā€ were each used as a key word to perform homolog searches. In addition, the amino acid sequences of Arabidopsis CaM2, CBL1, CDPK1, CRK1, and RbohD were used as queries to blast against the soybean genome database using the BlastP program. The nucleotide and protein sequences were obtained and analyzed for EF-hands and other domains using InterPro database (). Proteins not showing EF-han […]

library_books

Genome Wide Analyses of the Soybean F Box Gene Family in Response to Salt Stress

2017
Int J Mol Sci
PMCID: 5412402
PMID: 28417911
DOI: 10.3390/ijms18040818

[…] es throughout the plant life cycle []. However, the functions of most plant F-box genes remain unknown, especially in soybean. In this study, 509 F-box genes were identified in the new version of the soybean genome database Wm82.a2.v1. Our list of GmFBXs is generally consistent with the former works [] and is renewed according to the renewal of soybean genome database. They were classified into su […]

library_books

A Global Analysis of the Polygalacturonase Gene Family in Soybean (Glycine max)

2016
PLoS One
PMCID: 5033254
PMID: 27657691
DOI: 10.1371/journal.pone.0163012

[…] To identify soybean PG gene family members, 66 Arabidopsis PG protein sequences were used to search the soybean genome database version 2 (http://www.phytozome.net/) using the TBLASTP program. The cut-off of E-value was 1e-10, and the score was 40%. Previous studies have shown that all PG proteins conta […]

Citations

Looking to check out a full list of citations?

SoyGD institution(s)
Genomics Core-Facility, Southern Illinois University at Carbondale, Carbondale, IL, USA

SoyGD reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SoyGD