SPADE specifications
Information
| Unique identifier | OMICS_29411 |
|---|---|
| Name | SPADE |
| Alternative name | Search for Patterned DNA Elements |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Input format | GenBank, FASTA |
| Output format | GenBank |
| Operating system | Unix/Linux, Mac OS |
| Programming languages | Python |
| License | GNU General Public License version 3.0 |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
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Maintainer
- person_outline Nozomu Yachie <>
Publication for Search for Patterned DNA Elements
2018 Nucleic Acids Res
PMCID: 6344855
PMID: 30304510
DOI: 10.1093/nar/gky890
SPADE institution(s)
Synthetic Biology Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan; Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan; Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Japan; Department of Environment and Information Studies, Keio University, Fujisawa, Japan; Department of Biological Sciences, School of Science, The University of Tokyo, Tokyo, Japan; PRESTO, Japan Science and Technology Agency (JST), Tokyo, Japan
SPADE funding source(s)
Supported by the New Energy and Industrial Technology Development Organization (NEDO), by Japan Society for the Promotion of Science (JSPS), Japan Science, Technology Agency (JST) PRESTO program, Japan Agency for Medical Research and Development (AMED) PRIME program, The Naito Foundation, The Nakajima Foundation, The Takeda Foundation, SECOM Science and Technology Foundation, TTCK fellowships, the Mori Memorial Foundation, the Yamagishi Student Project Support Program of Keio University and a JSPS DC Fellowship.
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