SPADEVizR statistics

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SPADEVizR specifications

Information


Unique identifier OMICS_14290
Name SPADEVizR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A cell clustering.
Input format FCS, CSV, ACS
Output data A count viewer, a tree viewer, a heatmap viewer, a pheno viewer, a boxplot viewer, a kinetic viewer, a streamgraph viewer, a multidimensional scaling viewer, a distogram viewer and a biplot viewer.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0-4
Stability Stable
Maintained Yes

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  • person_outline Nicolas Tchitchek <>

Publication for SPADEVizR

SPADEVizR in publication

PMCID: 5814452
PMID: 29449630
DOI: 10.1038/s41598-018-21222-2

[…] longitudinal mass cytometry data analyses following immunization are scarce,. one of the main analysis challenge is the lack of appropriate pipelines. here, we used the spade algorithm together with spadevizr to analyze our high-dimensional cytometry data. this analysis pipeline can be used for any kind of multidimensional cytometry data analysis, beyond the study of the dynamic […]


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SPADEVizR institution(s)
CEA – Université Paris Sud 11 – INSERM U1184, Immunology of Viral Infections and Autoimmune Diseases, Fontenay-aux-Roses, France
SPADEVizR funding source(s)
This work has been supported by the grants ‘Investissement d'avenir: Equipements d'Excellence’ – 2010 FlowCyTech (ANR-10-EQPX-02-01) and ‘Infrastructures Nationales en Biologie et Santé’ – 2011 IDMIT (ANR-11-INBS-0008).

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