SPADEVizR specifications


Unique identifier OMICS_14290
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A cell clustering.
Input format FCS, CSV, ACS
Output data A count viewer, a tree viewer, a heatmap viewer, a pheno viewer, a boxplot viewer, a kinetic viewer, a streamgraph viewer, a multidimensional scaling viewer, a distogram viewer and a biplot viewer.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0-4
Stability Stable
Maintained Yes




No version available



  • person_outline Nicolas Tchitchek

Publication for SPADEVizR

SPADEVizR citation


Prime and Boost Vaccination Elicit a Distinct Innate Myeloid Cell Immune Response

Sci Rep
PMCID: 5814452
PMID: 29449630
DOI: 10.1038/s41598-018-21222-2

[…] all timepoints) to define the phenotype of each cluster as well as the topology of the tree. Full upsampling was eventually performed.For our dataset, the optimal SPADE settings were determined with SPADEVizR package as 20 clustering markers (CD66, HLA-DR, CD3, CD64, CD8, CD123, CD11a, CD11b, CD4, CD23, CD86, CD32, CXCR4, CCR5, CD16, CD11c, CD14, CD45, CD20 and CCR7), 600 clusters, a density-base […]

SPADEVizR institution(s)
CEA – Université Paris Sud 11 – INSERM U1184, Immunology of Viral Infections and Autoimmune Diseases, Fontenay-aux-Roses, France
SPADEVizR funding source(s)
This work has been supported by the grants ‘Investissement d'avenir: Equipements d'Excellence’ – 2010 FlowCyTech (ANR-10-EQPX-02-01) and ‘Infrastructures Nationales en Biologie et Santé’ – 2011 IDMIT (ANR-11-INBS-0008).

SPADEVizR reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SPADEVizR