SPAMIX statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SPAMIX
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Tool usage distribution map

This map represents all the scientific publications referring to SPAMIX per scientific context
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Associated diseases

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Popular tool citations

chevron_left Geographic assignment Genetic ancestry chevron_right
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SPAMIX specifications

Information


Unique identifier OMICS_30040
Name SPAMIX
Alternative name Spatial Ancestry analysis for Admixed Individual
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 0.1
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Bogdan Pasaniuc

Publication for Spatial Ancestry analysis for Admixed Individual

SPAMIX citations

 (2)
library_books

Toward high resolution population genomics using archaeological samples

2016
PMCID: 4991838
PMID: 27436340
DOI: 10.1093/dnares/dsw029

[…] n be obtained using ‘local ancestry’ tools (HAPMIX, or SABER, LAMP, and MULTIMIX and others) which allow inference of ‘local ancestry’ instead of the ‘global ancestry’ (that can be inferred with PCA, SPAMIX, GPS, ADMIXTURE, STRUCTURE, reAdmix) and their usage depends on the complexity of the data set, the expected mixture levels, and the available phenotypic data. For instance, if the phenotype is […]

library_books

Differential Evolution approach to detect recent admixture

2015
BMC Genomics
PMCID: 4480842
PMID: 26111206
DOI: 10.1186/1471-2164-16-S8-S9

[…] respectively) and are even less for non-Europeans [], suggesting their limitation for biogeographic applications [,,]. Note, that the country of origin does not necessarily correlate with ethnicity. SPAMIX [] is reported to have an accuracy of 550Km for two-ancestral admixtures, which is impressive but insufficient. Algorithms like mSpectrum [], HAPMIX [] and LAMP [] achieve good accuracy at a co […]


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SPAMIX institution(s)
Department of Computer Science, Department of Ecology and Evolutionary Biology, Interdepartmental Program in Bioinformatics, and Department of Human Genetics, University of California, Los Angeles, CA, USA; Department of Human Genetics, University of Chicago, Chicago, IL, USA; Department of Pathology and Laboratory Medicine, Geffen School of Medicine at University of California, Los Angeles, CA, USA
SPAMIX funding source(s)
Supported in part by the National Institutes of Health (R03-CA162200, R01-GM053275).

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