spaMM statistics

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spaMM specifications

Information


Unique identifier OMICS_17927
Name spaMM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License CeCILL version 2.1
Computer skills Advanced
Version 2.0.0
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline François Rousset <>

Publication for spaMM

spaMM in publications

 (65)
PMCID: 5740927
PMID: 29268741
DOI: 10.1186/s12915-017-0466-3

[…] when necessary the raw data were subjected to box–cox transformation. to include ‘replicate’ as a random effect, we used a generalized linear mixed model with the function hlfit from the r package ‘spamm’ []. in that case, p values were obtained from model selections and likelihood ratios (lr2) were given., to estimate the quantity of hemolymph in male and female hosts, we weighed 3- […]

PMCID: 5753990
PMID: 29064323
DOI: 10.1177/2045893217742000

[…] versions for improved resolution: signal-to-noise ratio (snr); scan time; and image quality. these include basic techniques such as magnetization saturation, spatial modulation of magnetization (spamm), delay alternating with nutations for tailored excitation (dante), and complementary spamm (cspamm), and advanced techniques such as harmonic phase (harp), displacement encoding […]

PMCID: 5570273
PMID: 28837573
DOI: 10.1371/journal.pbio.2002731

[…] (6.9%–18.4%), respectively. ne is calculated as the harmonic mean of the population size across generations., all statistical analysis was executed in r v3.2.4 and v3.3.1, respectively, when using spamm v 1.7.2 (model s-i, ) and nlme v3.1 (model s-ii to s-xviii, ) packages for linear mixed effects modelling [, ]. this enabled the inclusion within the same model of experimental factors (fixed […]

PMCID: 5487809
PMID: 28620745
DOI: 10.1007/s10741-017-9621-8

[…] the beginning of a cine sequence. the subsequent deformation of those lines throughout the cardiac cycle is analysed [, ]. a specific radiofrequency pre-pulse, spatial modulation of magnetization (spamm), was developed to efficiently saturate parallel planes throughout the imaging volume, and later, complementary spamm (cspamm) improved the contrast, providing sharper and better defined lines […]

PMCID: 5454269
PMID: 28539518
DOI: 10.1098/rspb.2017.0509

[…] autocorrelation, detected by global moran's i, was accounted for as a random effect through the use of spatial generalized linear mixed models (sglmm) using the function corrhlfit in the package ‘spamm’ in r v. 3.1.2 (r core team 2013) []., the relative plausibility of the candidate sglmms was determined using akaike's information criterion adjusted for small sample sizes (aicc; electronic […]


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spaMM institution(s)
Institut des Sciences de l’Evolution (UM2-CNRS), Universite Montpellier 2, Montpellier, France; Institut de Biologie Computationnelle, Montpellier, France; Laboratoire Evolution et Diversite Biologique, UMR 5174 CNRS – Univ. Paul Sabatier – ENFA, route de Narbonne, Toulouse, France
spaMM funding source(s)
Supported by an exploratory program (PEPS) « Comprendre les maladies emergentes et les epidemies ».

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