SparseSignatures specifications

Information


Unique identifier OMICS_31221
Name SparseSignatures
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Apache License version 2.0
Computer skills Advanced
Version 1.0.2
Stability Stable
Requirements
parallel, BiocGenerics, IRanges, GenomicRanges, testthat, GenomeInfoDb, Biostrings, BiocStyle, R(>=3.5), ggplot2, BSgenome, data.table, knitr, gridExtra, nnls, NMF, BSgenome.Hsapiens.1000genomes.hs37d5, nnlasso
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Daniele Ramazzotti <>

Publication for SparseSignatures

SparseSignatures institution(s)
Department of Pathology, Stanford University, Stanford, CA, USA; Department of Computer Science, Stanford University, Stanford, CA, USA; Department of Statistics, Stanford University, Stanford, CA, USA; Department of Biomedical Data Science, Stanford University, Stanford, CA, USA; Department of Genetics, Stanford University, Stanford, CA, USA
SparseSignatures funding source(s)
Supported by an R01 grant (NIH/NCI) and gift funding from the BRCA Foundation as well as by a Young Investigator Award from the BRCA Foundation.

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