SpartaABC statistics

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Associated diseases

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SpartaABC specifications

Information


Unique identifier OMICS_18047
Name SpartaABC
Interface Web user interface
Restrictions to use None
Input data Requires sequence data (either nucleotide or protein) as input.
Input format FASTA, NEWICK
Output data Provides a step-by-step progress report.
Programming languages C++
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Tal Pupko <>

Publication for SpartaABC

SpartaABC in publication

PMCID: 5438127
PMID: 28453624
DOI: 10.1093/gbe/evx084

[…] little has been done to model indel dynamics, probably due to the difficulty in writing explicit likelihood functions. here, we contribute to the effort of modeling indel dynamics by presenting spartaabc, an approximate bayesian computation (abc) approach to infer indel parameters from sequence data (either aligned or unaligned). spartaabc circumvents the need to use an explicit likelihood […]


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SpartaABC institution(s)
Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel; Department of Molecular Biology and Ecology of Plants, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel; The Biodesign Institute, Arizona State University, Tempe, AZ, USA; School of Life Sciences, Arizona State University, Tempe, AZ, USA
SpartaABC funding source(s)
This work was supported by BSF [2015247]; ISF [1092/13, 802/16]; Edmond J. Safra Center for Bioinformatics at Tel Aviv University Fellowship.

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