SPAtest specifications


Unique identifier OMICS_16323
Name SPAtest
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 3.0.0
Stability Stable
Maintained Yes


No version available



  • person_outline Rounak Dey

Publication for SPAtest

SPAtest citation


Genetic identification of a common collagen disease in Puerto Ricans via identity by descent mapping in a health system

PMCID: 5595434
PMID: 28895531
DOI: 10.7554/eLife.25060.033

[…] as covariates in our model. The regression was performed using four methods; Generalized Linear Models (GLM) using the glm() function in Rv3.2.1; a score test based on the saddlepoint approximation (SPATest) using the SPAtest() function in Rv3.2.1; a score test using a base adjustment for rare variants (Firth test) using the logistf() function in Rv3.2.1; and a linear mixed model using the GCTAv1 […]

SPAtest institution(s)
Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA
SPAtest funding source(s)
This work was supported by grants R01 HG008773.

SPAtest reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SPAtest