SpecOMS specifications

Information


Unique identifier OMICS_19250
Name SpecOMS
Alternative name Spectra Open Modification Search
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A database source file, a contaminants file and an experimental spectra file.
Input format MGF
Output data A collection of PSM.
Operating system Windows
Programming languages Java
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained No

Subtools


  • SpecFit
  • SpecTrees
  • SpecXtract

Versioning


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Documentation


Maintainers


This tool is not available anymore.

Additional information


https://hal.archives-ouvertes.fr/hal-01337288

Publication for Spectra Open Modification Search

SpecOMS institution(s)
LS2N UMR CNRS 6004, Université de Nantes, Nantes, France; INRA UR1268 Biopolymères Interactions Assemblages, Nantes, France
SpecOMS funding source(s)
This work was partly funded by the Région Pays de la Loire (France) GRIOTE program (2013-2018).

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