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Spectral libraries (MS-based proteomic analysis)

Spectral libraries and public repositories for MS-based proteomic analysis.

PRIDE
Dataset

PRIDE PRoteomics IDEntifications database

A centralized, standards compliant, public data repository for proteomics data,…

A centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. PRIDE…

HPM
Web

HPM Human Proteome Map

An interactive resource to the scientific community by integrating the massive…

An interactive resource to the scientific community by integrating the massive peptide sequencing result from the draft map of the human proteome project. The Human Proteome Map was based on LC-MS/MS…

PeptideAtlas
Dataset

PeptideAtlas

Annotates eukaryotic genomes with peptide sequences obtained from mass…

Annotates eukaryotic genomes with peptide sequences obtained from mass spectrometry (MS) experiments. PeptideAtlas is a compendium of observations of peptides and associated annotations, based on a…

GPMDB
Dataset

GPMDB Global Proteome Machine and Database

A database of proteomics experimental information emphasizing biological…

A database of proteomics experimental information emphasizing biological context, data reuse & validation. GPMDB is based on a combination of data analysis servers, a user interface, and a…

pRolocdata
Desktop

pRolocdata

Extracts relevant metadata from an MSnSet instance. PRolocdata collects…

Extracts relevant metadata from an MSnSet instance. PRolocdata collects published protein-complex dataset and mass spectrometry-based spatial/organelle. The data are used through the two software…

MassBank
Dataset

MassBank

Public repository of mass spectral data for sharing them among scientific…

Public repository of mass spectral data for sharing them among scientific research community.

Peptidome
Dataset

Peptidome

Provides a high-quality mass spectra repository. Peptidome aims to enhance…

Provides a high-quality mass spectra repository. Peptidome aims to enhance proteomic research. It offers user-friendly tools that enable users to query, locate, analyze and review the data of…

Spectral…
Desktop

Spectral Dictionaries

Generates spectral dictionaries by using the generating function of tandem mass…

Generates spectral dictionaries by using the generating function of tandem mass spectra (MS/MS) borrowed from statistical mechanics. Spectral Dictionaries analyzes the peptide reconstructions and…

SRMAtlas
Dataset

SRMAtlas

A compendium of targeted proteomics assays to detect and quantify proteins in…

A compendium of targeted proteomics assays to detect and quantify proteins in complex proteome digests by mass spectrometry.

GMDB
Dataset

GMDB Glycan Mass Spectral DataBase

Provides a multistage tandem mass spectral (MS) database using a variety of…

Provides a multistage tandem mass spectral (MS) database using a variety of structurally defined glycans. GMDB offers a resource for glycomics research that enables users to identify glycans by…

PepBase
Dataset

PepBase

Gathers information about mass spectrometry (MS)/MS spectra. PepBase is a…

Gathers information about mass spectrometry (MS)/MS spectra. PepBase is a peptide database that consists in a grouping of experimental data handled by a single analytical platform at the proteomics…

ProteomeXchange
Dataset

ProteomeXchange

Aims to fully represent all relevant aspects of a proteomics experiment and to…

Aims to fully represent all relevant aspects of a proteomics experiment and to make them easily accessible to the user.

CPTAC Data…
Dataset

CPTAC Data Portal

The Clinical Proteomic Tumor Analysis Consortium (CPTAC) analyzes cancer…

The Clinical Proteomic Tumor Analysis Consortium (CPTAC) analyzes cancer biospecimens by mass spectrometry, characterizing and quantifying their constituent proteins, or proteome. The CPTAC Data…

mSpecs Editor
Desktop

mSpecs Editor

Allows management and edition of mass spectral libraries in the field of…

Allows management and edition of mass spectral libraries in the field of metabolomics. mSpecs Editor provides capabilities for the automatic management and calculation of libraries though its…

SwePep
Dataset

SwePep

An endogenous peptide database to aid mass spectrometric identifications. In…

An endogenous peptide database to aid mass spectrometric identifications. In the identification process the experimental peptide masses are compared with the peptide masses stored in SwePep both with…

DeconMSn
Desktop

DeconMSn

Determines the monoisotopic mass and charge state of parent ions from high…

Determines the monoisotopic mass and charge state of parent ions from high resolution tandem mass spectrometry data. DeconMSn offers significant improvement for LTQ_FT and LTQ_Orbitrap instruments…

NeuroPedia
Dataset

NeuroPedia

A neuropeptide encyclopedia of peptide sequences (including genomic and…

A neuropeptide encyclopedia of peptide sequences (including genomic and taxonomic information) and spectral libraries of identified MS/MS spectra of homolog neuropeptides from multiple species.

Unimod
Dataset

Unimod

A database of protein modifications for use in mass spectrometry applications,…

A database of protein modifications for use in mass spectrometry applications, especially protein identification and de novo sequencing. Unimod contains accurate and verifiable values, derived from…

mzLib
Desktop

mzLib

Provides a library for mass spectrometry projects. mzLib is a C# method that…

Provides a library for mass spectrometry projects. mzLib is a C# method that reading spectra files, protein database files, modification files and databases from online sources.

Spectral…
Web

Spectral Workbench

Provides a range of tools which may be used on any spectrum page to manipulate…

Provides a range of tools which may be used on any spectrum page to manipulate or analyze user’s data. Spectral Workbench is a web-based software suite for collecting spectra, using Public Lab DIY…

MoNA
Dataset

MoNA Mass Bank of North America

Designed for efficient storage and querying of mass spectral records. MoNA…

Designed for efficient storage and querying of mass spectral records. MoNA intends to serve as a framework for a centralized, collaborative database of metabolite mass spectra, metadata and…

NIST Libraries…
Dataset

NIST Libraries of Peptide Tandem Mass Spectra

Gives access to comprehensive, annotated mass spectral reference collections…

Gives access to comprehensive, annotated mass spectral reference collections from various organisms and proteins. NIST Libraries of Peptide Tandem Mass Spectra are useful for the rapid matching and…

Chorus
Dataset

Chorus

Simple web application for storing, sharing, visualizing, and analyzing…

Simple web application for storing, sharing, visualizing, and analyzing spectrometry files.

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