SpectroGene specifications

Information


Unique identifier OMICS_10898
Name SpectroGene
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data SpectroGene takes as input (i) deconvoluted top-down spectra and (ii) a genomic sequence.
Output data It outputs the report describing the found proteoforms and ORF clusters.
Operating system Unix/Linux
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 1.0
Stability Stable
Requirements TopPIC, BioPython
Maintained Yes

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Documentation


SpectroGene article

SpectroGene institution(s)
Department of Computer Science and Engineering, UCSD, La Jolla, CA, USA; Department of BioHealth Informatics, IUPUI, Indianapolis, IN, USA
SpectroGene funding source(s)
National Institutes of Health (grant 5P41GM103484)

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