Spectronaut statistics

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Spectronaut specifications

Information


Unique identifier OMICS_06206
Name Spectronaut
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Windows
Programming languages C#
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

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Spectronaut in publications

 (16)
PMCID: 5882169
PMID: 29614109
DOI: 10.1371/journal.ppat.1006918

[…] 20 min. the mass spectrometer was operated in a data-independent acquisition (dia) mode with a 25-fixed-window setup of 24 m/z effective precursor isolation over the m/z range of 375–975 da., for spectronaut processing, raw files were loaded into spectronaut (version 11, biognosys) with an in-house p. falciparum-infected red blood cell library and default settings. briefly, rt prediction type […]

PMCID: 5893242
PMID: 29662647
DOI: 10.18632/oncotarget.24632

[…] for the ms scan (from 400 to 1200 m/z) and 100 ms for the product ion scan (230 to 1500 m/z), thus making a 3.5 s total cycle time., peak extraction of the swath data was performed using either the spectronaut software (ver 8.0, biognosys, switzerland) or swath micro app embedded in peakview (ver2.0, sciex). swath data were processed with default settings in spectronaut. reference peptides […]

PMCID: 5847575
PMID: 29531254
DOI: 10.1038/s41598-018-22610-4

[…] in dia acquisition, on the spectral libraries used to extract the data. therefore, we processed the datasets using different library generation strategies. swath libraries were generated in spectronaut using proteome prefractionation (following standard approaches,), repeated injection of a sample mixture matching the actual sample matrix (‘exhaustion’), or by pseudo-ms/ms correlative […]

PMCID: 5880102
PMID: 29363612
DOI: 10.1074/mcp.RA117.000189

[…] mass tolerance of 10ppm (precursor ions) and 0.02 da (fragment ions); minimal peptide length of 7 amino acids. the false discovery rate was set to < 0.01. the spectral library was generated in spectronaut (biognosys ag, schlieren, switzerland) using default settings., dia files were searched in spectronaut against the generated spectral library using default settings. for quantification […]

PMCID: 5724188
PMID: 29070702
DOI: 10.1074/mcp.RA117.000314

[…] dia with state of the art liquid chromatography, mass spectrometry (), high precision indexed retention time (irt) () and data processing., we improved the dia workflow on multiple levels and used spectronaut for the targeted analysis (). significant improvements were achieved by ms1 resolution and dynamic range increase, using high resolution chromatography, increased sample loading, high […]


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