Spectrum Clustering statistics

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Spectrum Clustering specifications

Information


Unique identifier OMICS_23690
Name Spectrum Clustering
Alternative names NorBel2, Norbel2 Clustering, PepMerger
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Lennart Martens <>
  • person_outline Kristian Flikka <>

Publication for Spectrum Clustering

Spectrum Clustering in publications

 (8)
PMCID: 5876601
PMID: 29562651
DOI: 10.3390/s18030904

[…] alternatively, tao et al. located the candidate regions by incorporating the extracted corners and modeled the candidate regions with a texture histogram, then the non-urban regions were removed by spectrum clustering and graph cuts []. however, it needs to cooperate with several other images to accomplish the detection. methods incorporating harris corner voting and other techniques also […]

PMCID: 5414595
PMID: 28118949
DOI: 10.1016/j.tibs.2017.01.001

[…] unidentified spectra rather than only previously identified spectra. pride has recently provided the first spectral archive version of a proteomics repository . this archive was created using a spectrum-clustering approach that enabled the detection of millions of consistently observed but unidentified spectra across hundreds of public data sets. by using alternative analysis approaches, […]

PMCID: 5375835
PMID: 28282936
DOI: 10.3390/s17030549

[…] (wnn) [], dynamic neural networks and fuzzy inference. these classification algorithms are usually used to recognize faults according to the extracted features. yu et al. [] used window marginal spectrum clustering (wmsc) to select features from the marginal spectrum vibration signals by htt and adopted svm to classify faults. wang et al. [] used the statistical locally linear embedding […]

PMCID: 4968634
PMID: 27493588
DOI: 10.1038/nmeth.3902

[…] spectrometry (ms) is the main technology used in proteomics approaches. however, on average 75% of spectra analysed in an ms experiment remain unidentified. we propose to use spectrum clustering at a large-scale to shed a light on these unidentified spectra. proteomics identifications database (pride) archive is one of the largest ms proteomics public data repositories […]

PMCID: 4796900
PMID: 26987793
DOI: 10.1038/srep23357

[…] to annotate and group the proteins according to biological process, molecular function, and cellular compartmentalization. multiexperiment viewer 4.3 software was used for a differential expression spectrum clustering analysis of the differential proteins. string 9.1 software was used to analyze the possible protein-protein interaction (ppi) networks. the kyoto encyclopaedia of genes […]


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Spectrum Clustering institution(s)
Computational Biology Unit, Bergen Center for Computational Science, University of Bergen, Bergen, Norway; Proteomics Unit at University of Bergen (PROBE), Bergen, Norway; Department of Informatics, University of Bergen, Bergen, Norway; Department of Medical Protein Research, VIB, Ghent, Belgium; Department of Biochemistry, Ghent University, Ghent, Belgium
Spectrum Clustering funding source(s)
Supported by a grant from Lauritz Meltzer Foundation and The National Programme for Research in Functional Genomics in Norway (FUGE) in The Research Council of Norway.

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