SpeeDB specifications

Information


Unique identifier OMICS_08512
Name SpeeDB
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline David E. Robillard

Publication for SpeeDB

SpeeDB citation

library_books

An Effective Filter for IBD Detection in Large Data Sets

2014
PLoS One
PMCID: 3965454
PMID: 24667521
DOI: 10.1371/journal.pone.0092713

[…] se accurate IBD inference methods makes them computationally infeasible to apply on very large data sets. Here, we describe an efficient and accurate filtering method for IBD detection which we named SpeeDB. Given a query unphased genotyped individual and a database of unphased genotyped individuals, SpeeDB rapidly screens out genomic regions in the database that are unlikely to be IBD with the qu […]

SpeeDB institution(s)
School of Computer Science, Carleton University, Ottawa, Canada

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