SphereGrinder statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

SphereGrinder specifications

Information


Unique identifier OMICS_16761
Name SphereGrinder
Software type Framework/Library
Interface Graphical user interface
Input data A reference structure and some predicted models.
Input format PDB
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Requirements
OpenGL
Maintained Yes

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Documentation


Maintainer


  • person_outline Piotr Lukasiak <>

Additional information


http://spheregrinder.cs.put.poznan.pl/index.php?slab=help http://spheregrinder.cs.put.poznan.pl/index.php?slab=about

Publication for SphereGrinder

SphereGrinder in publication

PMCID: 4282348
PMID: 23900810
DOI: 10.1002/prot.24377

[…] and its choice is amino-acid-dependent. in this case, the cd values come from 10 different alignments of the target and the model with distance thresholds of 0.5, 1.0, 1.5, … 4.0, 4.5, and 5 å.spheregrinder (sphgr) score, which is calculated from local comparisons of predicted and observed atomic coordinate subsets. for each residue in the target structure, all atoms within 6 å of its cα […]


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SphereGrinder institution(s)
Institute of Computing Science, Poznan University of Technology, Poznan, Poland; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland; Protein Structure Prediction Center, Genome and Biomedical Sciences Facility, University of California, Davis, CA, USA
SphereGrinder funding source(s)
Supported by National Science Center Poland [2012/05/B/ST6/03026], National Science Center Poland [2012/061 A/ST6/00384].

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