SpidermiR statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Gene regulatory network inference chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

SpidermiR specifications

Information


Unique identifier OMICS_15481
Name SpidermiR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.10.0
Stability Stable
Requirements
AnnotationDbi, stats, gplots, utils, testthat, BiocStyle, grDevices, lattice, ggplot2, rmarkdown, knitr, R(>=3.0.0), org.Hs.eg.db, latticeExtra, igraph, httr, gridExtra, gdata, devtools, roxygen2, networkD3, TCGAbiolinks, miRNAtap, miRNAtap.db, visNetwork
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Claudia Cava <>

Publication for SpidermiR

SpidermiR in publication

PMCID: 5756345
PMID: 29304754
DOI: 10.1186/s12864-017-4423-x

[…] gene-gene or protein-protein networks, which include physical interaction, genetic interaction, shared protein domains, co-localization, and functional reaction interactions, were downloaded using spidermir []., we applied our approach to cancer datasets obtained from the cancer genome atlas (tcga) []. we used the illumina hiseq rnaseqv2 of 7158 tumour/normal samples from 16 cancer types (see […]


To access a full list of publications, you will need to upgrade to our premium service.

SpidermiR funding source(s)
Supported by INTEROMICS flagship project, National Research Council CUP Grant B91J12000190001, and the project grant SysBioNet, Italian Roadmap Research Infrastructures 2012; by a grant from Henry Ford Hospital and by the São Paulo Research Foundation (FAPESP) (2016/01389-7 and 2015/07925-5).

SpidermiR reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SpidermiR