SpidermiR statistics

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Citations per year

Citations chart

Popular tool citations

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Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

SpidermiR specifications


Unique identifier OMICS_15481
Name SpidermiR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.10.0
Stability Stable
AnnotationDbi, stats, gplots, utils, testthat, BiocStyle, grDevices, lattice, ggplot2, rmarkdown, knitr, R(>=3.0.0), org.Hs.eg.db, latticeExtra, igraph, httr, gridExtra, gdata, devtools, roxygen2, networkD3, TCGAbiolinks, miRNAtap, miRNAtap.db, visNetwork
Maintained Yes



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  • person_outline Claudia Cava <>

Publication for SpidermiR

SpidermiR in publication

PMCID: 5756345
PMID: 29304754
DOI: 10.1186/s12864-017-4423-x

[…] gene-gene or protein-protein networks, which include physical interaction, genetic interaction, shared protein domains, co-localization, and functional reaction interactions, were downloaded using spidermir []., we applied our approach to cancer datasets obtained from the cancer genome atlas (tcga) []. we used the illumina hiseq rnaseqv2 of 7158 tumour/normal samples from 16 cancer types (see […]

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SpidermiR funding source(s)
Supported by INTEROMICS flagship project, National Research Council CUP Grant B91J12000190001, and the project grant SysBioNet, Italian Roadmap Research Infrastructures 2012; by a grant from Henry Ford Hospital and by the São Paulo Research Foundation (FAPESP) (2016/01389-7 and 2015/07925-5).

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