SpikeIns statistics

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Associated diseases

Associated diseases

SpikeIns specifications

Information


Unique identifier OMICS_23424
Name SpikeIns
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline John C. Marioni <>

Publication for SpikeIns

SpikeIns in publications

 (2)
PMCID: 2702171
PMID: 19584914
DOI: 10.1371/journal.pone.0006178

[…] cy5) was present; and third, by the performance of the non-h. glaberrima sequences printed on the array., for the first technical test, agilent's microarrays contain a series of internal controls (spikeins) that allow monitoring the technical performance of the array, in terms of linearity, sensitivity and accuracy. the 536 internal controls behaved as expected, e.g., spikein e1a_r60_n9 […]

PMCID: 2579310
PMID: 18947404
DOI: 10.1186/1471-2105-9-452

[…] inference is the most difficult, gcrma-nn provides a better accuracy with no loss of precision (fig. )., since the results of affycomp suggest an improvement for the low intensity, hard to detect spikeins, we reasoned that inference performed with gcrma-nn would be more successful than inference with gcrma-r or gcrma-l. we therefore applied gcrma-nn, gcrma-r and gcrma-l to the u133 latin […]


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SpikeIns institution(s)
Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Cambridge, UK; Wellcome Trust and MRC Cambridge Stem Cell Institute, University of Cambridge, Cambridge, UK; EMBL European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK
SpikeIns funding source(s)
Supported by Cancer Research UK (award no. A17197), the University of Cambridge and Hutchison Whampoa Limited; by core funding from EMBL; by an EMBL Interdisciplinary Postdoctoral fellowship, supported by H2020 Marie Skłodowska Curie Actions; by Cancer Research UK, Bloodwise, the National Institute of Diabetes and Digestive and Kidney Diseases, the Leukemia and Lymphoma Society, and core infrastructure grants from the Wellcome Trust and the Medical Research Council.

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