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Citations per year

Number of citations per year for the bioinformatics software tool Spincouple
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Protocols

Spincouple specifications

Information


Unique identifier OMICS_23158
Name Spincouple
Interface Web user interface
Restrictions to use None
Programming languages Javascript, PHP
Database management system SQLite
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jun Kikuchi

Publication for Spincouple

Spincouple citations

 (4)
library_books

Application of kernel principal component analysis and computational machine learning to exploration of metabolites strongly associated with diet

2018
Sci Rep
PMCID: 5821832
PMID: 29467421
DOI: 10.1038/s41598-018-20121-w

[…] emical mixtures in NMR-based metabolic profiling. Such databases and tools, for example, include the human metabolome database, biological magnetic resonance data bank, 1H (13C) TOCCATA,, SpinAssign, SpinCouple, MetaboAnalyst, NMRShiftDB, MVAPACK, rNMR, BATMAN, statistical total correlation spectroscopy, fragment-assembly approach, and signal enhancement by spectral integration (SENSI) method.In t […]

library_books

Exploring the Impact of Food on the Gut Ecosystem Based on the Combination of Machine Learning and Network Visualization

2017
PMCID: 5748757
PMID: 29194366
DOI: 10.3390/nu9121307

[…] ing for feces and urine was also performed using 2D J-resolved NMR with skyline projection []. The detected peaks in NMR spectra were annotated using SpinAssign (http://dmar.riken.jp/spinassign/) and SpinCouple (http://dmar.riken.jp/spincpl/) programs, as well as the Human Metabolome Database (http://www.hmdb.ca/) [,,]. […]

call_split

Bacterial Substrate Transformation Tracked by Stable Isotope Guided NMR Metabolomics: Application in a Natural Aquatic Microbial Community

2017
PMCID: 5746732
PMID: 29048351
DOI: 10.3390/metabo7040052
call_split See protocol

[…] were further assigned by integrating the HSQC‒TOCSY correlation signal data and the chemical shift (δ1H) and J-coupling value determined by 2D-Jres-dc. For the δ1H and J-value of each metabolite, the SpinCouple ([], http://dmar.riken.jp/spincpl/), HMDB, and BMRB databases were used. In Experiment 2, the HSQC data collected in the experiments conducted on 16 May 2016, 2 June 2016, and 26 April 2017 […]

library_books

Trans omics approaches used to characterise fish nutritional biorhythms in leopard coral grouper (Plectropomus leopardus)

2017
Sci Rep
PMCID: 5570933
PMID: 28839183
DOI: 10.1038/s41598-017-09531-4

[…] The annotations and assignments of metabolites detected in the NMR spectra analysis were performed using the SpinAssign program found on the PRIMe website (http://prime.psc.riken.jp/), the web-based SpinCouple tool (http://emar.riken.jp/spincpl), and the Human Metabolome Database (http://www.hmdb.ca/). […]


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Spincouple institution(s)
RIKEN Center for Sustainable Resource Science, Yokohama, Japan; Graduate School of Medical Life Science, Yokohama City University, Yokohama, Japan; Department of Information Systems, Niigata University of International and Information Studies, Niigata, Japan; Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
Spincouple funding source(s)
Supported in part by a Grant-in-Aid for Scientific Research (Grant 25513012) and by the Council for Science, Technology and Innovation (CSTI), Cross-ministerial Strategic Innovation Promotion Program (SIP), “Technologies for creating next-generation agriculture, forestry and fisheries” funded by the Bio-oriented Technology Research Advancement Institution (NARO).

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