SPInDel pipeline

SPInDel specifications

Information


Unique identifier OMICS_01496
Name SPInDel
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for SPInDel

SPInDel IN pipeline

2017
PMCID: 5345719
PMID: 28082325
DOI: 10.1534/g3.116.038190

[…] sides by nipponbare alleles (aha-type error, for more details see “results”), we found that raw read alignments supported the called parental genotype in all analyzed cases., as shown here, and in spindel et al. (2013), gbs data inherently contains errors, and has to be imputed to be useful for linkage analysis. for our work, we took advantage of the fact that missing data, and wrongly called […]

SPInDel institution(s)
Institute of Molecular Pathology and Immunology, University of Porto (IPATIMUP), Porto, Portugal

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