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- Splice Expression Variation Analysis
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(Afsari et al., 2018)
Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer.
PMID: 29342249 DOI: 10.1093/bioinformatics/bty004
Department of Oncology, The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD, USA; Department of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD, USA; McKusick-Nathans Institute of Genetic Medicine, Department of Medicine, Johns Hopkins University, Baltimore, MD, USA; Department of Otolaryngology – Head and Neck Surgery (OHNS), University of California, San Francisco, CA, USA; Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA; Department of Applied Mathematics and Statistics, Johns Hopkins University, Baltimore, MD, USA; Department of Mathematics and Statistics, The College of New Jersey, Ewing Township, NJ, USA; Head and Neck Cancer Center, Moores Cancer Center, University of California, San Diego, La Jolla, CA, USA; Division of Otolaryngology-Head and Neck Surgery, Department of Surgery, La Jolla, CA, USA; Laboratory of Systems Biology and Computational Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia; Laboratory of Bioinformatics, Research Institute of Genetics and Selection of Industrial Microorganisms, Moscow, Russia
This work was supported by the National Institutes of Health: National Cancer Institute (grants n°P30 CA006973 and R01 CA177669), the National Institute on Deafness and Other Communication Disorders (grant n°T32DC000027-26), the National Institute of Dental and Craniofacial Research (grants n°R21 DE025398, R01 DE023347, P50 DE019032, R01 DE023227), the National Library of Medicine (grant n°R01LM011000 ), the Russian Foundation for Basic Research (grant n°14-04-01872), the National Science Foundation (grant n°ABI-1356078) and The Adenoid Cystic Carcinoma Research Foundation.
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