SpliceDetector specifications

Information


Unique identifier OMICS_28110
Name SpliceDetector
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data Some transcript IDs in both single and multiple forms.
Input format XLS,GTF,GFF3
Operating system Windows
Programming languages C#
Computer skills Medium
Stability Stable
Requirements
.NET
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Esmaeil Ebrahimie

Publication for SpliceDetector

SpliceDetector citation

call_split

SpliceDetector: a software for detection of alternative splicing events in human and model organisms directly from transcript IDs

2018
Sci Rep
PMCID: 5864913
PMID: 29567976
DOI: 10.1038/s41598-018-23245-1
call_split See protocol

[…] data as a reference data is a noticeable clue in all of these mentioned tools. However, our approach has been established on the frequency of active splice sites in pre-mRNA which is provided by the SpliceDetector application directly from Ensembl database due to online mode of software. In the first step, exons with the highest frequency of their splice sites were selected as putative exons. The […]

SpliceDetector institution(s)
Institute of Biotechnology, Shiraz University, Shiraz, Iran; Science and Research Branch, Islamic Azad university, Hamedan, Iran; Department of Biology, University of Qom, Qom, Iran; Adelaide Medical School, The University of Adelaide, Adelaide, SA, Australia; School of Information Technology and Mathematical Sciences, Division of Information Technology, Engineering and the Environment, The University of South Australia, Adelaide, SA, Australia; School of Biological Sciences, Faculty of Science and Engineering, Flinders University, Adelaide, SA, Australia

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