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Predicts alternative splicing patterns and produces splice graphs that capture in a single structure the ways a gene's exons may be assembled. SpliceGrapher enhances gene models using evidence from next-generation sequencing and EST alignments.

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SpliceGrapher forum

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SpliceGrapher classification

SpliceGrapher specifications

Unique identifier:
OMICS_01266
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes

SpliceGrapher distribution

versioning

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No versioning.

SpliceGrapher support

Maintainer

  • Asa Ben-Hur <>

Credits

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Publications

Institution(s)

Department of Computer Science, Colorado State University, Fort Collins, CO, USA; Department of Biology and Program in Molecular Plant Biology, Colorado State University, Fort Collins, CO, USA; Department of Statistics, Colorado State University, Fort Collins, CO, USA

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