SpliceNet specifications

Information


Unique identifier OMICS_05474
Name SpliceNet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for SpliceNet

SpliceNet citation

library_books

Bioinformatics challenges and perspectives when studying the effect of epigenetic modifications on alternative splicing

2018
PMCID: 5915717
PMID: 29685977
DOI: 10.1098/rstb.2017.0073

[…] n modelling gene regulatory networks. Network views of isoforms provide a more accurate representation than lists of differentially spliced transcripts, where each transcript is treated independently.SpliceNet built a disease-specific isoform network for lung adenocarcinoma using RNA-seq data. This method identified differences in isoform interactions between Siva1, Cflar and Bcl-x in normal and d […]

SpliceNet institution(s)
Department of Biochemistry, The University of Hong Kong, Hong Kong, China; Department of Pathology, The University of Hong Kong, Hong Kong, China; Centre for Genomic Sciences, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong, China; Shenzhen Institute of Research and Innovation, The University of Hong Kong, Shenzhen, China; Department of Statistics and Actuarial Science, Faculty of Science, The University of Hong Kong, Hong Kong, China

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