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SpliceNet specifications

Information


Unique identifier OMICS_05474
Name SpliceNet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for SpliceNet

SpliceNet in publication

PMCID: 5915717
PMID: 29685977
DOI: 10.1098/rstb.2017.0073

[…] gene regulatory networks. network views of isoforms provide a more accurate representation than lists of differentially spliced transcripts, where each transcript is treated independently., splicenet built a disease-specific isoform network for lung adenocarcinoma using rna-seq data. this method identified differences in isoform interactions between siva1, cflar and bcl-x in normal […]


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SpliceNet institution(s)
Department of Biochemistry, The University of Hong Kong, Hong Kong, China; Department of Pathology, The University of Hong Kong, Hong Kong, China; Centre for Genomic Sciences, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong, China; Shenzhen Institute of Research and Innovation, The University of Hong Kong, Shenzhen, China; Department of Statistics and Actuarial Science, Faculty of Science, The University of Hong Kong, Hong Kong, China

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