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SplicePlot specifications


Unique identifier OMICS_02185
Name SplicePlot
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Gene sequence variations, exons and aligned RNA-seq data
Input format VCF, GTF, BAM, TXT
Output data Plot setting file
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Advanced
Version 1.1
Stability Stable
Numpy, Scipy, Matploblib, Pandas, Pysam
Source code URL https://codeload.github.com/wueric/SplicePlot/zip/master
Maintained Yes


No version available

Publication for SplicePlot

SplicePlot citation


A survey of best practices for RNA seq data analysis

Genome Biol
PMCID: 4728800
PMID: 26813401
DOI: 10.1186/s13059-016-0881-8

[…] and aesthetically pleasing when the number of samples is small (figure s1d in additional file ). sashimi, structure, and hive plots for splicing quantitative trait loci (sqtl) can be obtained using spliceplot []. splice graphs can be produced using spliceseq [], and splicingviewer [] plots splice junctions and alternative splicing events. trav [] is a visualization tool that integrates data […]

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SplicePlot institution(s)
Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA
SplicePlot funding source(s)
Edward Mallinckrodt Jr. Foundation

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