SpliceTrap specifications

Information


Unique identifier OMICS_01292
Name SpliceTrap
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FASTA, FASTQ
Output format TXT, RAW, NUMS, LOG
Operating system Unix/Linux
Programming languages Perl, R
Computer skills Advanced
Version 0.90.5
Stability Stable
Requirements Qsub, bowtie, RMAP
Maintained Yes

Versioning


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Maintainers


  • person_outline Michael Zhang <>
  • person_outline Jie Wu <>

Additional information


http://rulai.cshl.edu/splicetrap/doc/index.html

Publication for SpliceTrap

SpliceTrap institution(s)
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY, USA; Department of Molecular and Cell Biology, Center for Systems Biology, The University of Texas at Dallas, Richardson, TX, USA; Bioinformatics Div., Center for Synthetic and Systems Biology, TNLIST, Tsinghua University, Beijing, China
SpliceTrap funding source(s)
Supported by National Institutes of Health (GM74688).

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