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Associated diseases

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SpliceView specifications


Unique identifier OMICS_09619
Name SpliceView
Interface Web user interface
Restrictions to use None
Input data Single sequence
Computer skills Basic
Stability No
Maintained No

Publication for SpliceView

SpliceView in publications

PMCID: 5431179
PMID: 28469144
DOI: 10.1038/s41598-017-01577-8

[…] the variant is absent from exonic sequence databases. it has not been reported previously and is therefore also absent from the hgmd., in silico analysis of the c.254–649t > g mutation using spliceview and maximum entropy predicts that the mutation generates a novel donor splice site (score of 85 [spliceview] and 8.76 [maximum entropy model]) compared to no predicted donor site […]

PMCID: 5542186
PMID: 28423360
DOI: 10.18632/oncotarget.16787

[…] neuroblastoma presumably by causing a partial or complete dysfunction of the protein., 1 splice site changes predicted by netgene2 and nnsplice; 2 splice site changes predicted by mutation taster, spliceview, netgene2 and nnsplice; 3 splice site changes predicted by mutation taster and human splicing finder; abbreviations: hr, high risk; inss, international neuroblastoma staging system; ir, […]

PMCID: 5036194
PMID: 27666404
DOI: 10.1038/srep33920

[…] site of intron 7 by the following softwares: bdgp (the score decreases from 0.88 to 0.60 when passing from the wt to the mutant allele), netgene2 (confidence decreases from 0.95 to 0.33) and spliceview (score decreases from 83 to 79). finally, this deletion was predicted to alter the splicing mechanism eliminating or creating branch point motif by the hsf3.0 bioinformatic tool ()., […]

PMCID: 4145250
PMID: 25135358
DOI: 10.1186/s12883-014-0154-7

[…] mutations on the function and the structure of proteins. for prediction of effects of mutations on splicing of pre-mrna, the in silico tools netgene2 (http://www.cbs.dtu.dk/services/netgene2/) and spliceview (http://bioinfo4.itb.cnr.it/~webgene/wwwspliceview_ex.html) were used. the nomenclature of mutations was implemented according to the current hgvs recommendations […]

PMCID: 4236643
PMID: 25086949
DOI: 10.1186/s12883-014-0158-3

[…] of the defect with the phenotype (figure b). dna samples from other members of the family were not available for molecular analysis., the effects of the novel variant were evaluated using spliceview (http://bioinfo4.itb.cnr.it/~webgene/wwwspliceview_ex.html), spliceport (http://spliceport.cbcb.umd.edu), assp (http://wangcomputing.com/assp/index.html) and human splicing finder […]

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SpliceView institution(s)
Istituto di Tecnologie Biomediche Avanzate, Consiglio Nazionale Delle Ricerche, Milano, Italy

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