SPLICIFY specifications

Information


Unique identifier OMICS_19885
Name SPLICIFY
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A paired-end or single-end sequence.
Input format FASTQ
Operating system Unix/Linux
Programming languages Python, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Requirements R, bedtools, Trimmomatic, STAR, rMATS
Maintained Yes

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Maintainer


  • person_outline Remond Fijneman <>

Publication for SPLICIFY

SPLICIFY institution(s)
Translational Gastrointestinal Oncology, Department of Pathology, Netherlands Cancer Institute, Amsterdam, Netherlands; Oncoproteomics Laboratory, Department of Medical Oncology, VU University Medical Center, Amsterdam, Netherlands; School of Medicine at Mount Sinai, Institute for Genomics and Multiscale Biology, New York, NY, USA; Pacific Biosciences, Menlo Park, CA, USA
SPLICIFY funding source(s)
Supported by KWF Kankerbestrijding, project number 2013-6025 and PacBio AACR SMRT Grant Award; by the Dutch national e-infrastructure with the support of SURF Foundation.

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