SPLICIFY specifications

Unique identifier:
OMICS_19885
Interface:
Command line interface
Input data:
A paired-end or single-end sequence.
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
1.0
Requirements:
R, bedtools, Trimmomatic, STAR, rMATS
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ
Programming languages:
Python, R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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SPLICIFY distribution

download

SPLICIFY support

Maintainer

  • Remond Fijneman <>

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Credits

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Publications

Institution(s)

Translational Gastrointestinal Oncology, Department of Pathology, Netherlands Cancer Institute, Amsterdam, Netherlands; Oncoproteomics Laboratory, Department of Medical Oncology, VU University Medical Center, Amsterdam, Netherlands; School of Medicine at Mount Sinai, Institute for Genomics and Multiscale Biology, New York, NY, USA; Pacific Biosciences, Menlo Park, CA, USA

Funding source(s)

Supported by KWF Kankerbestrijding, project number 2013-6025 and PacBio AACR SMRT Grant Award; by the Dutch national e-infrastructure with the support of SURF Foundation.

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