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Splicing Express specifications


Unique identifier OMICS_18041
Name Splicing Express
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Input data Requires GTF files
Input format GTF
Output data Expression graphics
Output format HTML
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes




No version available


  • person_outline Sandro de Souza

Publication for Splicing Express

Splicing Express citations


Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

BMC Genomics
PMCID: 5813380
PMID: 29444639
DOI: 10.1186/s12864-018-4515-2

[…] estimate of the log2fc is divided by its standard error, generating a z-statistic that can be compared to a standard normal distribution []., to classify splicing events with the suppa [] and splicing express [] softwares, genome bam files were generated with the star software [], by using the same parameters described above. these bam files were employed to assemble transcripts […]


Divergence in Morris Water Maze Based Cognitive Performance under Chronic Stress Is Associated with the Hippocampal Whole Transcriptomic Modification in Mice

PMCID: 5582454
PMID: 28912681
DOI: 10.3389/fnmol.2017.00275

[…] (gene only) and inclusion of both direct and indirect relationships. the analysis used fisher's exact test to calculate p-values., alternative splicing events (ase) were identified by the software splicing express (kroll et al., ). briefly, all gtf files created by cufflinks (roberts et al., ) were inserted with the mouse genome reference sequence (mm10) to run the software splicing express […]

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Splicing Express institution(s)
Institute of Bioinformatics and Biotechnology, Natal, Rio Grande do Norte, Brazil; Brain Institute, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil; Department of Biomedical Informatics, University of California, San Diego, La Jolla, CA, USA
Splicing Express funding source(s)
This work was supported by CNPq: 501891/2013-7, 483775/2012-6; CAPES: edital 051/2013; NIH: D43TW007015, U54HL108460.

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