SplicingCompass specifications

Unique identifier:
OMICS_01340
Interface:
Command line interface
Input data:
Read count and junctions
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Input format:
GFF + BED
Programming languages:
R
Computer skills:
Advanced
Maintained:
No
  • Animals
    • Homo sapiens

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Publications

Institution(s)

Bioinformatics HUSAR, Genomics Proteomics Core Facility, German Cancer Research Center (DKFZ), Heidelberg, Germany; Division of Theoretical Bioinformatics, DKFZ, Heidelberg, Germany; Department of Pediatric Oncology and Hematology and Center for Molecular Medicine Cologne (CMMC), University Children’s Hospital, Cologne, Germany; Department of Bioinformatics and Functional Genomics, Institute of Pharmacy and Molecular Biotechnology, Bioquant, University of Heidelberg, Heidelberg, Germany; Center for Sepsis Control and Care, University Hospital Jena, Jena, Germany; Leibniz Institute for Natural Products Research and Infection Biology, Hans-Knoll-Institute, Jena, Germany

Funding source(s)

This project was supported by the Joint Germany-Israeli Research Program (ca-139) (DKFZ/MOST), the Nationales Genom-Forschungs-Netz (NGFN+), ENGINE (#01GS0898).

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