SRBreak specifications
- Unique identifier:
- OMICS_14791
- Software type:
- Pipeline/Workflow
- Restrictions to use:
- None
- Operating system:
- Unix/Linux
- Stability:
- Stable
- Name:
- Split-read and Read-depth based Breakpoints
- Interface:
- Command line interface
- Input format:
- BAM
- Computer skills:
- Advanced
- Maintained:
- Yes
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SRBreak distribution
download
SRBreak support
Maintainer
- Hoang Nguyen <>
forum
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Publications
-
(Nguyen et al., 2016)
SRBreak: A Read-Depth and Split-Read Framework to Identify Breakpoints of Different Events Inside Simple Copy-Number Variable Regions.
Front Genet.
PMID: 27695476 DOI: 10.3389/fgene.2016.00160
Institution(s)
Department of Biochemistry, University of Otago, Dunedin, New Zealand; Virtual Institute of Statistical Genetics, Dunedin, New Zealand; Department of Psychiatry, Mount Sinai School of Medicine, New York, NY, USA; Department of Mathematics, Cao Thang College of Technology, Ho Chi Minh City, Vietnam
Funding source(s)
Supported by the Virtual Institute of Statistical Genetics and by the University of Otago Postgraduate Publishing Bursary.
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