SplitMEM specifications


Unique identifier OMICS_10600
Name SplitMEM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Michael Schatz

Publication for SplitMEM

SplitMEM citations


BGDMdocker: a Docker workflow for data mining and visualization of bacterial pan genomes and biosynthetic gene clusters

PMCID: 5712467
PMID: 29204317
DOI: 10.7717/peerj.3948

[…] l the completion of the entire process, thus improving overall efficiency.In recent years, several online tools and software suites have been developed for pan-genome analysis, including Roary, PGPA, SplitMEM, PanGP, and PanTools. However, generally, the installation of these pipelines with many dependencies, but a single function, is complex and challenging. Therefore, limiting researchers’ abili […]


A representation of a compressed de Bruijn graph for pan genome analysis that enables search

PMCID: 4950428
PMID: 27437028
DOI: 10.1186/s13015-016-0083-7

[…] ternal and paternal haplotype of individual NA12878 (Utah female) of the 1000 Genomes Project; see []. Our software and test data are available at https://www.uni-ulm.de/in/theo/research/seqana.html; splitMEM can be obtained from http://www.sourceforge.net/projects/splitmem/.We implemented the three algorithms A1–A3 described in the preliminary version of this article [] and our new algorithm A4 u […]

SplitMEM institution(s)
Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Department of Computer Science, Stony Brook University, Stony Brook, NY, USA
SplitMEM funding source(s)
This project was supported in part by National Institutes of Health award [R01-HG006677] and National Science Foundation awards [DBI-126383 and DBI-1350041].

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