SplitMEM specifications

Information


Unique identifier OMICS_10600
Name SplitMEM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Michael Schatz <>

Publication for SplitMEM

SplitMEM in publication

PMCID: 4950428
PMID: 27437028
DOI: 10.1186/s13015-016-0083-7

[…] \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$o(n\log g)$$\end{document}o(nlogg) time algorithm called splitmem that constructs this graph directly (i.e., without using the uncompressed de bruijn graph) based on a suffix tree, where n is the total length of the genomes and g is the length […]


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SplitMEM institution(s)
Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Department of Computer Science, Stony Brook University, Stony Brook, NY, USA
SplitMEM funding source(s)
This project was supported in part by National Institutes of Health award [R01-HG006677] and National Science Foundation awards [DBI-126383 and DBI-1350041].

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