SplitPocket statistics

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Associated diseases

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SplitPocket specifications

Information


Unique identifier OMICS_04693
Name SplitPocket
Interface Web user interface
Restrictions to use None
Input data The coordinates of a structure.
Input format PDB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Wen-Hsiung Li <>

Publication for SplitPocket

SplitPocket in publications

 (2)
PMCID: 5591938
PMID: 28932239
DOI: 10.1155/2017/5124165

[…] [], where it scans the protein surfaces for pockets and also interior of proteins for voids followed by further protein functional surfaces identification and spatial pattern characterization using splitpocket web server (http://pocket.med.wayne.edu/patch/) []. prediction of glycosylation groups for dppiv (pdb id: 4a5s) was performed using netnglyc 1.0 server […]

PMCID: 5314347
PMID: 28211464
DOI: 10.1038/srep42589

[…] refined model using the weighted delaunay triangulation. we then identified putative pockets (local surfaces) of structural models by applying the flow algorithm (http://cast.engr.uic.edu/) and the splitpocket algorithm (http://pocket.med.wayne.edu/) to characterize local protein surfaces. for each identified pocket, we computed geometric measurements for pocket residues, solvent accessible […]


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SplitPocket institution(s)
Department of Ecology and Evolution, University of Chicago, Chicago, IL, USA; Center for Computational Biology and Bioinformatics, University of Texas at Austin, One University Station, Austin, TX, USA; Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
SplitPocket funding source(s)
Supported by National Institutes of Health (grant GM30998); Academia Sinica, Taiwan.

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