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|Interface||Web user interface|
|Restrictions to use||None|
|Input data||The coordinates of a structure.|
- person_outline Wen-Hsiung Li
Publication for SplitPocket
Computational Analysis of Gynura bicolor Bioactive Compounds as Dipeptidyl Peptidase IV Inhibitor
[…] determinant of substrate specificity. The selection of the largest binding pocket of DPPIV receptor PDB ID: 4A5S for ligand docking was supported by the physicochemical features of the pocket itself. SplitPocket analysis had identified the presence of a split pocket which is detectable when a functional pocket binds to a ligand, substrate, or other proteins or peptides causing the interaction betw […]
Molecular Basis of ABHD5 Lipolysis Activation
[…] a refined model using the weighted Delaunay triangulation. We then identified putative pockets (local surfaces) of structural models by applying the flow algorithm (http://cast.engr.uic.edu/) and the SplitPocket algorithm (http://pocket.med.wayne.edu/) to characterize local protein surfaces. For each identified pocket, we computed geometric measurements for pocket residues, solvent accessible area […]
Building a virtual ligand screening pipeline using free software: a survey
[…] . Should the binding site not be known from previous crystallized protein–ligand complexes, several binding pocket prediction methods are available, e.g. MetaPocket , DoGSiteScorer , CASTp  and SplitPocket  (see  for a review of related approaches). Next, a quality control is necessary, as protein crystal structures in public repositories like the PDB often contain errors or missing resi […]
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