SplitsTree pipeline

SplitsTree specifications

Information


Unique identifier OMICS_08887
Name SplitsTree
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Version 4.0
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/SplitsTree

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Publications for SplitsTree

SplitsTree IN pipelines

 (56)
2018
PMCID: 5809883
PMID: 29433445
DOI: 10.1186/s12864-018-4531-2

[…] to estimate the best-fit substitution model. the genome of shewanella denitrificans os217 was chosen to serve as an outgroup. the phylogenetic network of the concatenated data was constructed using splitstree v4.14.6, with a neighbor net drawing and jukes-cantor correction [38]. a pan-genome tree was constructed according to the presence/absence of all homologous genes using raxml. besides, […]

2018
PMCID: 5812596
PMID: 29444108
DOI: 10.1371/journal.pone.0191860

[…] can be found in s1 and s2 tables., amino acid sequences of proteins involved in siderophore biosynthesis were aligned using clustalw [57]. proteins belonging to same clusters were concatenated using splitstree4 [56] and exported to fasta format, thus generating the final datasets. next, mega6 [58] was used to generate maximum likelihood (ml) trees based on the individual siderophore biosynthesis […]

2018
PMCID: 5857380
PMID: 29345222
DOI: 10.1099/mgen.0.000153

[…] in table 1. the software used was as follows:, oligo analyzer (https://eu.idtdna.com/calc/analyzer);ugene (http://ugene.net/);mega 7 (http://megasoftware.net/);snapgene (https://snapgene.com/);splitstree (http://splitstree.org/)., kluyveromyces marxianus is emerging as one of the most important non-saccharomyces yeasts under development for biotechnological applications. it has traits […]

2018
PMCID: 5857380
PMID: 29345222
DOI: 10.1099/mgen.0.000153

[…] software used was as follows:, oligo analyzer (https://eu.idtdna.com/calc/analyzer);ugene (http://ugene.net/);mega 7 (http://megasoftware.net/);snapgene (https://snapgene.com/);splitstree (http://splitstree.org/)., kluyveromyces marxianus is emerging as one of the most important non-saccharomyces yeasts under development for biotechnological applications. it has traits such as rapid growth, […]

2018
PMCID: 5860741
PMID: 29558470
DOI: 10.1371/journal.pone.0193718

[…] for gc content (mol %), gc % deviation from their respective genomes (table b in s1 file) as well as p-distance calculations through mega 7.0. phylogenetic network analysis was performed using splitstree software [54] (figures e and f in s1 file)., the genbank accession numbers for the 16s rrna, gyrb, atpg, dnaj, rpob, arsc, narg, and nirs gene sequences of strain kas 5-3t are jx173988, […]

SplitsTree institution(s)
Center for Bioinformatics ZBIT, Tübingen University, Tübingen, Germany

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