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SPODOBASE specifications

Information


Unique identifier OMICS_03142
Name SPODOBASE
Restrictions to use None
Maintained Yes

Publication for SPODOBASE

SPODOBASE citations

 (8)
library_books

Optimization of recombinant bacteria expressing dsRNA to enhance insecticidal activity against a lepidopteran insect, Spodoptera exigua

2017
PLoS One
PMCID: 5553977
PMID: 28800614
DOI: 10.1371/journal.pone.0183054

[…] A CHY-like gene was identified from midgut transcriptome []. Using its gene sequence (GenBank accession number: AY820894.1) as query, BLAST search was performed against SPODOBASE database. Blasted sequences (SeCHYs) were re-annotated using Blast P in NCBI GenBank database. Predicted amino acid sequences were then aligned using Clustal W (DNASTAR Version 7.0). Phyloge […]

library_books

SfDredd, a Novel Initiator Caspase Possessing Activity on Effector Caspase Substrates in Spodoptera frugiperda

2016
PLoS One
PMCID: 4792459
PMID: 26977926
DOI: 10.1371/journal.pone.0151016

[…] Using sequence of BmDredd as a query to search homolog in SPODOBASE [] (http://bioweb.ensam.inra.fr/spodobase/) by TBLASTN, a sequence (Accession no. Sf1P14817-5-1) highly similar to BmDredd, the Dredd homolog in Bombyx mori [] was identified. Based on that […]

library_books

De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing

2015
Biol Direct
PMCID: 4545970
PMID: 26290335
DOI: 10.1186/s13062-015-0072-7

[…] model. Since, ESTs are already available for Spodoptera frugiperda from different tissue/cell types, to attain confidence in the transcriptome, the assembled contigs were compared against the ESTs in SPODOBASE []. The analysis showed that, over 53 % of total ESTs aligned to the Sf21 transcripts, while over 60 % of the ESTs from S. frugiperda were aligned to the assembled contigs. These analyses co […]

call_split

Dissimilar Regulation of Antimicrobial Proteins in the Midgut of Spodoptera exigua Larvae Challenged with Bacillus thuringiensis Toxins or Baculovirus

2015
PLoS One
PMCID: 4436361
PMID: 25993013
DOI: 10.1371/journal.pone.0125991
call_split See protocol

[…] tic trees were visualized with MEGA5. Sequences from other species employed in phylogenetic analyses were retrieved after Blast-search against different databases: NCBI’s non-redundant database (nr), SPODOBASE (http://bioweb.ensam.inra.fr/spodobase/) and Silkworm Genome Database (http://silkworm.genomics.org.cn/). To obtain Spodoptera frugiperda amino acid sequences, we used S. exigua nucleotide s […]

call_split

Genome wide screening of RNAi factors of Sf21 cells reveal several novel pathway associated proteins

2014
BMC Genomics
PMCID: 4247154
PMID: 25199785
DOI: 10.1186/1471-2164-15-775
call_split See protocol

[…] identify and characterize putative RNAi candidates in S. frugiperda, we considered predicted ORF’s from Sf21 whole genome sequencing, mRNAs from whole transcriptome sequences and ESTs extracted from SPODOBASE [] as well. A search for homologs of RNAi factors present in Spodoptera frugiperda genome was carried out using protein sequences of the known RNAi factors of Bombyx mori, Tribolium castaneu […]

library_books

A Role for Innexin2 and Innexin3 Proteins from Spodoptera litura in Apoptosis

2013
PLoS One
PMCID: 3728205
PMID: 23936205
DOI: 10.1371/journal.pone.0070456

[…] published sequences of SfINX2 from S. frugiperda and BmINX2 and BmINX3 from B. mori were downloaded from GenBank. We also found three fragments, Sf1M11836-5-1, Sf2L00880-5-1, and Sf2L01032-5-1, using SPODOBASE that were predicted to belong to the INX3 family based on alignment results, and the consensus of these fragments was named SfINX3_Partial. Meanwhile, to understand more about the endogenous […]

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SPODOBASE institution(s)
1Unité Informatique de Centre, INRA-AgroM, Montpellier, France

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