SPOT-Struct-RNA statistics

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Associated diseases

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SPOT-Struct-RNA specifications

Information


Unique identifier OMICS_08410
Name SPOT-Struct-RNA
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data PDB File (PDB format), PDBID & chain
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Yaoqi Zhou <>

Information


Unique identifier OMICS_08410
Name SPOT-Struct-RNA
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data PDB File (PDB format), PDBID & chain
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Yaoqi Zhou <>

Publication for SPOT-Struct-RNA

SPOT-Struct-RNA in publication

PMCID: 5035060
PMID: 27662342
DOI: 10.1371/journal.pcbi.1005120

[…] similar investigation of template-based approach to protein-rna complex structure prediction is still lacking (although the approach has been applied to predicting rna binding sites on proteins in spot-struct-rna[])., we performed such investigation on a representative set of protein-rna complexes. the analysis of all-to-all alignments in the set revealed a transition point between random […]


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SPOT-Struct-RNA institution(s)
School of Informatics, Indiana University Purdue University, Indianapolis, IN, USA; Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA

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