SPRDist protocols

SPRDist specifications

Information


Unique identifier OMICS_10307
Name SPRDist
Software type Application/Script, Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C++
Computer skills Advanced
Version 1.0.2
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Yufeng Wu <>

Publication for SPRDist

SPRDist IN pipeline

2010
PMCID: 2829038
PMID: 20152048
DOI: 10.1186/1471-2148-10-42

[…] minimum spr distance., phylonet's [20] hgt is based on an extended implementation of the riata-hgt algorithm [21] rooted, unrooted, bifurcating and multifurcating trees can be used with phylonet., sprdist [12] uses integer programming to find the minimum rspr distance utilizing the connection between the maximum agreement forest (maf) and the rspr distance proposed in [8] and later amended […]

SPRDist institution(s)
Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA
SPRDist funding source(s)
Supported by National Science Foundation (IIS-0803440) and University of Connecticut; National Science Foundation (partial CCF-0515278, IIS-0513910).

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