SPREAD pipeline

SPREAD specifications

Information


Unique identifier OMICS_08645
Name SPREAD
Alternative names Spatial Phylogenetic Reconstruction of Evolutionary Dynamics, spread-phy
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 1.0.7
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Filip Bielejec <>

Publication for Spatial Phylogenetic Reconstruction of Evolutionary Dynamics

SPREAD IN pipeline

2013
PMCID: 3689766
PMID: 23805195
DOI: 10.1371/journal.pone.0065999

[…] all sequences were analysed by bayesian phylogeographic analysis, implemented in the bayesian evolutionary analysis sampling trees (beast), bayesian tip-association significance testing (bats) and spatial phylogenetic reconstruction of evolutionary dynamics (spread) software packages. selection pressure on the hvr-vp2 was also assessed. the phylogeographic association-trait analysis showed […]

SPREAD institution(s)
Rega Institute for Medical Research, Clinical and Epidemiological Virology Section, Katholieke Universiteit Leuven, Leuven, Belgium
SPREAD funding source(s)
European Research Council under the European Community's Seventh Framework Programme (FP7/2007-2013)/ERC Grant agreement no. 260864; National Institutes of Health (R01 GM086887); The National Evolutionary Synthesis Center (NESCent) catalysed this collaboration through a working group (NSF EF-0423641)

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