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Spritz specifications

Information


Unique identifier OMICS_25683
Name Spritz
Interface Web user interface
Restrictions to use None
Input data Some protein sequences.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Publication for Spritz

Spritz in publications

 (9)
PMCID: 5895634
PMID: 29643398
DOI: 10.1038/s41598-018-23969-0

[…] for disorder analysis, several specialized predictors have been developed, for example, pondr® pool [pondr® fit, pondr® vls2, pondr® vlxt], as well as iupred, disopred, disembl, globplot, spritz, and much more. to evaluate the precision of disorder predictors, several aforementioned tools were compared within the frames of the critical assessment of protein structure prediction […]

PMCID: 5291697
PMID: 28168220
DOI: 10.1126/sciadv.1602350

[…] instructions. genejuice was used for all virus recovery transfections., medor () was used to predict disordered domains in mev-edm n using the iupred (), globplot2 (), disembl (), foldindex (), spritz (), and ronn () algorithms. furthermore, mev-edm n was submitted to pondr-fit () and disopred () for disorder predictions. to quantitatively assess the consensus of all algorithms, average […]

PMCID: 5095677
PMID: 27867910
DOI: 10.3389/fcimb.2016.00144

[…] family [e.g., pondr® fit (xue et al., ), pondr® vlxt (romero et al., ), and pondr® vsl2 (obradovic et al., ), iupred (dosztanyi et al., ), globplot (linding et al., ), disopred (ward et al., ), spritz (vullo et al., ), disembl (linding et al., )], etc. many of these predictors have been assessed for accuracy within the frames of the critical assessment of protein structure prediction (casp) […]

PMCID: 4632708
PMID: 26426014
DOI: 10.3390/ijms161023446

[…] core., cspritz is a web server for the prediction of intrinsic protein disorder []. this approach accomplishes the prediction through a combination of three machine learning systems including spritz (based on psi-blsat multiple sequence profiles and secondary structure), punch (an svm-based predictor extending spritz), and espritz (an efficient brnn based predictor). cspritz not only uses […]

PMCID: 4486954
PMID: 26130271
DOI: 10.1038/srep11629

[…] on a sephacryl s100 column as described for hlt-iaspp ank-sh3., the following servers were used for disorder prediction of iaspp pro: ronn, iupred, disembl, foldindex, globplot2, prdos, spritz and disprot. in all cases, iaspp pro 1-602 (swiss-prot entry q8wuf5) was subjected to disorder prediction using default server parameters., cd spectra of hlt-iaspp pro were recorded using […]


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Spritz institution(s)
School of Computer Science and Informatics, University College Dublin, Ireland; Department of Biology and CRIBI Biotechnology Centre, University of Padova, Italy
Spritz funding source(s)
Supported by an Embark Fellowship from the Irish Research Council for Science, Engineering and Technology, Science Foundation Ireland grants 04/BR/ CS0353 and 05/RFP/CMS0029, a grant RP/2005/219 from the Health Research Board of Ireland and UCD President’s Award 2004 and Seed Funding scheme 2005 grants and a ‘Rientro dei cervelli’ grant from the Italian Ministry for Education, University and Research (MIUR).

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