SQANTI specifications


Unique identifier OMICS_26086
Alternative name Structural and Quality Annotation of Novel Transcript Isoforms
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes



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Publication for Structural and Quality Annotation of Novel Transcript Isoforms

SQANTI institution(s)
Department of Microbiology and Cell Science, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, FL, USA; Genomics of Gene Expression Laboratory, Centro de Investigaciones Principe Felipe (CIPF), Valencia, Spain; Neural Regeneration Laboratory, CIPF, Valencia, Spain; Department of Developmental and Cell Biology, University of California, Irvine, CA, USA; VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium; Department of Biochemistry, Ghent University, Ghent, Belgium; Centro Nacional de Investigaciones Cardiovasculares CNIC, Madrid, Spain; Centro Nacional de Investigaciones Oncologicas CNIO, Madrid, Spain; RNA transport and metabolism Laboratory, CIPF, Valencia, Spain
SQANTI funding source(s)
This work has been partially funded by the University of Florida Pre-eminence hires program, the Spanish Ministry of Economy and Competitiveness grant BIO2015-71658-R and Spanish Ministry of Education grant FPU2013/02348.

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