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Squeezambler | Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities

A method to sequence and de novo assemble all distinct genomes present in a microbial sample with a sequencing cost and computational complexity proportional to the number of genome types, rather than the number of cells. Squeezambler reduces the cost of sequencing in comparison with the naïve exhaustive approach.

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Squeezambler forum

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Squeezambler classification

Squeezambler specifications

Unique identifier:
OMICS_01503
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C++
Version:
2.0.3
Maintained:
Yes

Squeezambler distribution

versioning

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No versioning.

Squeezambler support

Maintainer

  • Zeinab Taghavi <>

Credits

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Publications

Institution(s)

Department of Computer Science; and Department of Obstetrics and Gynecology, Wayne State University, Detroit, MI, USA

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